Everything Stuffed Bagel Bites

Mini bagel bites made with a simple four-ingredient dough and filled with creamy cheese! There’s no yeast, boiling, or complicated preparation required. These homemade stuffed bagel bites are soft, fluffy, and make a delicious breakfast or snack whenever you’re craving something warm and satisfying.

If you loved the classic stuffed bagel bites from Starbucks, you’ll definitely want to try making them at home. After experimenting with different recipes and methods, I found that a simple Greek yogurt-based dough works beautifully. It gives these little bites a fluffy texture without requiring yeast or a long rising time.

They’re also incredibly easy to customize. Keep the classic everything seasoning, switch up the cream cheese, or make a sweet version with cinnamon and fruit. Once you try them, you may want to keep a batch ready for quick breakfasts throughout the week.

Ingredients You’ll Need

Here’s everything you’ll need to make these easy stuffed bagel bites:

Greek yogurt: Use plain Greek yogurt for the best results. Regular yogurt contains more liquid and may make the dough too soft.

Flour: All-purpose flour works well, but you can also use a suitable gluten-free flour blend if needed.

Baking powder: This helps the dough rise while baking and gives the bagel bites their light, fluffy texture.

Salt: A small amount of salt enhances the flavor of the dough and balances the other ingredients.

Everything But the Bagel Seasoning (EBTB): Sprinkle it over the tops for that classic savory bagel flavor.

Cream cheese: Block-style cream cheese is ideal because it can easily be cut into small cubes for stuffing.

Egg white: Brushing the tops with egg white helps the seasoning stick and keeps the bites from becoming overly brown.

How to make the best homemade stuffed bagel bites (just like Starbucks!)

1. Preheat your oven. Set the oven to 375°F and line a baking sheet with parchment paper.
2. Make your dough. Add the flour, salt, and baking powder to a large bowl and mix them together. Stir in the Greek yogurt until everything comes together and a soft dough forms. The dough should pull away from the sides of the bowl once fully mixed.
3. Form the balls. Lightly flour your work surface and divide the dough into 8 equal portions. Roll each portion between your hands to create a smooth, compact ball. Rolling them tightly helps prevent the filling from escaping during baking.
4. Stuff them! Flatten each dough ball until it is about ¼ inch thick. Place one cube of cream cheese in the center, then fold the dough around it and pinch the edges together to completely seal the filling inside. Gently roll the stuffed dough between your hands to create a smooth ball.
5. Bake & serve. Whisk the egg white and place each stuffed bagel bite seam-side down on the prepared baking sheet. Lightly brush the tops with egg white and sprinkle with everything bagel seasoning. Bake for 20–25 minutes, or until lightly golden and cooked through. Let them cool slightly before serving.

Super easy, right?

Let’s get creative!

Everything bagel seasoning isn’t the only way to enjoy these stuffed bagel bites. You can easily change the filling and toppings to create different sweet or savory combinations.

Here are some ideas to try:

• Flavored cream cheese: Use strawberry, blueberry, chive and onion, or another favorite flavor. You can leave the tops plain or add sesame or poppy seeds.
• Green onion and cream cheese: Mix finely chopped green onions into your cream cheese before stuffing the dough.
• Cinnamon raisin: Add cinnamon and raisins to the filling, then sprinkle the finished bites with cinnamon sugar.
• Jam and cream cheese: Add a small spoonful of your favorite jam along with the cream cheese for a sweet-and-creamy center.

There are so many combinations to try, so don’t be afraid to experiment with different fillings and toppings.

FAQ’s for making bagel bites

Can I freeze my bagel bites?
Absolutely! Once the bagel bites have cooled completely, place them in a freezer-safe zip-top bag. Double-bagging them can provide additional protection against freezer burn. For the best quality, use the frozen bagel bites within about one month.

How do I reheat my bagel bites?
For the best texture, thaw frozen bagel bites first. Then place them in a 375°F oven for about 10–15 minutes, or until heated to your preferred temperature. Allow them to cool briefly before eating because the cream cheese filling can become very hot.

Can I make my bagel bites ahead of time?
Yes. The unbaked dough can be prepared in advance and stored in an airtight container in the refrigerator. For the best results, use the dough within 1–2 days before baking.

Tips for making bagel bites

• Lightly flour your work surface and hands before handling the dough. This makes shaping much easier and prevents the dough from sticking.
• If the dough continues sticking to your hands, you can use kitchen gloves or add a very small amount of flour as needed.
• Make sure the dough is completely sealed around the cream cheese. If you notice an opening, gently pinch the seams together before baking.
• If you’re having trouble sealing the dough, dip your finger in a little warm water and gently rub it along the seams to help them stick together.
• Don’t overfill the dough with cream cheese, as too much filling can make it difficult to seal the bagel bites properly.

Sometimes the cream cheese filling may seem to disappear during baking. If that happens, don’t worry—the bites can still taste delicious. You can always add a little extra cream cheese when serving.

Why you’ll love this easy bagel bites recipe

• Super simple! There’s no yeast, boiling, rising, or special equipment required. You only need a few basic ingredients and a bowl to get started.
• Quick breakfast option: These stuffed bagel bites can go from your kitchen counter to the oven in a short amount of time, making them perfect for busy mornings.
• Easy to customize: Change the cream cheese, toppings, or fillings to create a flavor everyone will enjoy.
• Great for meal prep: Make a batch ahead of time and store the extras in the freezer for an easy breakfast or snack later.
• Gluten-free option: If you need a gluten-free version, substitute the regular flour with a gluten-free flour blend that works well for baking.

[Made one of my recipes? Make sure to tag my social media @kalefornia_kravings – I love seeing what you create!]

More breakfast recipes like you might like:

• Sourdough French Toast Casserole with Blueberries
• Cinnamon Peach Banana Bread
• Cinnamon Banana Bread Bagels
• Banana Bread French Toast

Easy Stuffed Bagel Bites

Mini bagel bites made with a simple Greek yogurt dough and filled with cream cheese make an easy breakfast, brunch, or snack. They’re finished with everything bagel seasoning for a savory flavor and baked until golden and fluffy.

Prep Time: 20 minutes
Cook Time: 25 minutes
Total Time: 45 minutes
Course: Breakfast, Brunch, Snack
Cuisine: American
Servings: 8 bagel bites
Author: Caitlin

Ingredients

• 1 cup plain Greek yogurt
• 1 cup all-purpose flour
• 2 teaspoons baking powder
• ½ teaspoon salt
• 4 ounces cream cheese, cut into 8 cubes
• 1 egg white, whisked
• Everything But the Bagel Seasoning, for sprinkling